PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g035690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 244aa    MW: 26474.7 Da    PI: 6.7929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g035690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016217239223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F++   L++H +  H
  Csa09g035690.1 217 SCGSCKKTFNSGNALESHNKAkH 239
                     6*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEFWGIEVKP GKPVKVTPER HTLIHVSQAS LGECKNKKEE FVSVHVKVGD QKLVMGNLST  60
ENIPQLFCDL VFEKEFELSH NWGKGSLYFV GYTSPNIADN DGEDFSDSEE EEEEVEEVPA  120
TITANGNPKP KAKPAQVKKN AKPADGMVVD EDSEEEEETP TPKKPVSSKK RANEEAPKTP  180
VSSKKAKVAV TPQKTDEKKK GGKNPATQSP KSASQVSCGS CKKTFNSGNA LESHNKAKHA  240
AAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1955452e-93AF195545.1 Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA, complete cds.
GenBankAY0653962e-93AY065396.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
GenBankAY0967292e-93AY096729.1 Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425893.11e-176PREDICTED: histone deacetylase HDT1-like isoform X2
SwissprotQ9FVE61e-102HDT1_ARATH; Histone deacetylase HDT1
TrEMBLR0FQZ91e-106R0FQZ9_9BRAS; Uncharacterized protein
STRINGAT3G44750.11e-99(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-56histone deacetylase 3